User Guide

The User Guide covers using an installed DSA instance: finding images, viewing them, and annotating them.

Available now

• Mouse and keyboard controls — the complete viewer shortcut reference, adapted from HistomicsUI.
• Annotation basics — the concepts behind annotation documents, elements, and style groups, plus the everyday workflow.
• Annotation style groups — configure a shared palette and restrict an annotation to allowed groups.
• Permissions and access control — how users, groups, roles, inheritance, public folders, and annotation access fit together.
• Troubleshooting and FAQ — fixes for sign-in, viewing, upload, permissions, annotations, and analysis jobs.

Everyday tasks

• Connect to a DSA server
• Create a folder
• Upload or import images
• Share a collection or folder
• Copy an item
• Edit metadata
• Annotate a slide
• Run an analysis

Planned

The following pages will be written from the HistomicsUI source and from real use of the current release, not from memory:

• Exporting annotations.

If you need one of these now, use the HistomicsUI README and the Girder documentation, or ask in GitHub Discussions.